Drosophila melanogaster
- Tandem Repeat Analysis
Protocol
Experimental procedure
The file d_melanogaster.fasta corresponds to the frozen data (April 15, 2004
ftp://ftp.fruitfly.org/pub/download/compressed/
) of
Drosophila melanogaster
genome.
Genome sequence FASTA file
Genome complexity - 118,357,599 bp
The file was submitted to Tandem Repeats Finder (TRF) (
Benson, 1999
) program using the following parameters:
2 5 7 80 10 25 1000.
TRF output files were analyzed by the Tandem Repeat Analysis Program (TRAP) using the following parameters:
Minimum period size of repeats - 7
Maximum period size of repeats - 10
Minimum identity percentage - 100
Create HTML - yes
Sorting - according to the total number of bases